5.3 Populate the tracking database with the designated result folder for each sample to be processed

Besides populating the input file S3 path, users will also need to set the results folder using the API command VCPA provides, so that this information will be effectively imported to the tracking database:

function rawurlencode(){
echo -n "$1" | perl -pe 's/([^a-zA-Z0-9_.!~*()'\''-])/sprintf("%%%02X", ord($1))/ge' | perl -pe 's/(\W)/sprintf("%%%02X", ord($1))/ge'
}

$  s3='s3://YOUR/RESULTS/FOLDER'    ### S3 path for the results folder for each sample 
$  results_s3_path=$(rawurlencode $s3)

$ curl -sS "http://IP/v1/sample/set-attr/results_s3_uri/${project_id}/${sample_name}/${results_s3_path}"

where

a) project_id: this is the project ID outputted by Section 3.2

b) sample_name: sample name (note this needs to match the sample name of the input file in the S3 bucket)

c) results_s3_path: S3 path of where the results will be written to